Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs9559775 chr13:111002576 A/G 0.000126 111 0 19.33 13.2 KM Plot
LAML rs9564743 chr13:71345967 T/A 1.89E-5 110 0 5 16.27 KM Plot
LAML rs9578603 chr13:24040733 C/G 1.47E-7 109 13.15 21.78 1 KM Plot
LAML rs9590459 chr13:114915852 A/G 2.64E-5 110 16.17 19.23 2.55 KM Plot
LAML rs9604356 chr13:113205463 C/T 0.000127 111 15.2 16.27 0 KM Plot
LAML rs9652616 chr16:71727290 C/G 0.000157 111 15.2 14.67 0 KM Plot
LAML rs9677795 chr2:19946888 G/C 2.21E-12 111 17.78 14.13 0 KM Plot
LAML rs968579 chr19:48246401 G/C 7.49E-7 108 5.1 22.37 14.18 KM Plot
LAML rs9789631 chr2:3216867 A/C 5.94E-5 111 0 14.7 15.2 KM Plot
LAML rs9789653 chr2:3216775 T/C 5.94E-5 111 0 14.7 15.2 KM Plot
LAML rs9868809 chr3:48681053 C/T 0.0001 109 15.23 12.2 0 KM Plot
LAML rs9903408 chr17:30389662 G/A 1.84E-5 107 12.17 19.23 0 KM Plot
LAML rs9944055 chr14:90792793 G/A 2.41E-6 111 12.18 21.37 1.03 KM Plot
LAML rs9960719 chr18:46355157 A/G 0.00014 107 16.77 5.1 23.3 KM Plot
LAML rs9986056 chr4:2245642 A/G 8.98E-5 110 17.23 7.13 20.75 KM Plot